Read Mapping
ZOOM guarantees 100% sensitivity for a wide range of single/paired-end read lengths (15-240 bps with practical mismatches). Benchmarking displays proven accuracy with the detection of insertions and deletions.

Methlyation Mapping
ZOOM has proven itself to be an ideal software used for epigenomics.

Bisulfite Treatment (A-rich & T-rich)
MethylC-seq
RRBS

Alternative Methods
MeDip-seq
MBP-seq

Thus making ZOOM stable enough to process 100 000 000 Illumina MethylC-seq reads per hour for Arabidopsis.

Genome Assembly
Provides reliable resources for both diploid & haploid samples.

SNP Discovery

• Multiple filtering criteria
• Statistics reporting
• Convenient navigation & inspection
• view SNP candidates conveniently along with the alignments between the reads and the reference sequence

OTHER FACTS:

• Reports uniquely mapping results or best N mapping results for each read
• Auto error correction for decoded color space reads (AB SOLiD)
• Assess alignment probability using read sequence quality scores
• View graphs of mapping results in any scale desired
• Easily navigation among interested regions
• Integrated multiple sequence alignment and post-probability computing for consensus reconstruction and SNP identification
• Export mapping results or assembled sequences in multiple formats
• Support both Linux and Windows platforms